Research and Conference Publications
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This collection contains journal articles and other research publications such as book chapters, conference papers, and posters authored by NT Health staff and provides an overview of the interests, research activities and projects undertaken by NT Health staff. Most journal articles are published in subscription-based or open access publications, so this collection contains mainly citations and links to full text content on external sites, but where permitted, the PDF file has been made available.
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Journal Article Implementing a national programme of pathogen genomics for public health: the Australian Pathogen Genomics Program (AusPathoGen).(2024-10-07) ;Webb, Jessica R ;Andersson, Patiyan ;Sim, Eby ;Zahedi, Alireza ;Donald, Angela ;Hoang, Tuyet ;Watt, Anne E ;Agius, Jessica E ;Donato, Celeste M ;Cummins, Max L ;Zulfiqar, Tehzeeb ;Nghiem, Son ;Lin, Chantel; ;Leong, Lex E X; ;Kennedy, Karina ;Cooley, Louise ;Speers, David ;Lim, Chuan Kok ;de Ligt, Joep ;Ferdinand, Angeline ;Glass, Katie ;Kirk, Martyn D ;Djordjevic, Steven P ;Sloggett, Clare ;Horan, Kristy ;Seemann, Torsten ;Sintchenko, Vitali ;Jennison, Amy VHowden, Benjamin PDelivering large-scale routine pathogen genomics surveillance for public health is of considerable interest, although translational research models that promote national-level implementation are not well defined. We describe the development and deployment of the Australian Pathogen Genomics Program (AusPathoGen), a comprehensive national partnership between academia, public health laboratories, and public health agencies that commenced in January, 2021. Successfully establishing and delivering a national programme requires inclusive and transparent collaboration between stakeholders, defined and clear focus on public health priorities, and support for strengthening national genomics capacity. Major enablers for delivering such a programme include technical solutions for data integration and analysis, such as the genomics surveillance platform AusTrakka, standard bioinformatic analysis methods, and national ethics and data sharing agreements that promote nationally integrated surveillance systems. Training of public health officials to interpret and act on genomic data is crucial, and evaluation and cost-effectiveness programmes will provide a benchmark and evidence for sustainable investment in genomics nationally and globally. - Publication
Journal Article The characteristics of SARS-CoV-2-positive children in Australian hospitals: a PREDICT network study.(2023-06-05) ;Ibrahim, Laila ;Wilson, Catherine ;Tham, Doris ;Corden, Mark ;Jani, Shefali ;Zhang, Michael ;Kochar, Amit ;Tan, Ker Fern ;George, Shane ;Phillips, Natalie T ;Buntine, Paul ;Robins-Browne, Karen ;Chong, Vimuthi ;Georgeson, Thomas; ;Davidson, Sarah ;O'Brien, Sharon ;Tran, VietBabl, Franz ETo examine the clinical characteristics and short term outcomes for children with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections who presented to Australian hospitals during 2020 and 2021.Retrospective case review study in nineteen hospitals of the Paediatric Research in Emergency Departments International Collaborative (PREDICT) network from all Australian states and territories, including seven major paediatric tertiary centres and eight Victorian hospitals.SARS-CoV-2-positive people under 18 years of age who attended emergency departments or were admitted to hospital during 1 February 2020 - 31 December 2021.Epidemiological and clinical characteristics, by hospital care type (emergency department [ED] or inpatient care).A total of 1193 SARS-CoV-2-positive children and adolescents (527 girls, 44%) attended the participating hospitals (107 in 2020, 1086 in 2021). Their median age was 3.8 years (interquartile range [IQR], 0.8-11.4 years); 63 were Aboriginal or Torres Strait Islander people (5%). Other medical conditions were recorded for 293 children (25%), including asthma (86, 7%) and premature birth (68, 6%). Medical interventions were not required during 795 of 1181 ED presentations (67%); children were discharged directly home in 764 cases (65%) and admitted to hospital in 282 (24%; sixteen to intensive care units). The 384 admissions to hospital (including 102 direct admissions) of 341 children (25 infants under one month of age) included 23 to intensive care (6%); the median length of stay was three days (IQR, 1-9 days). Medical interventions were not required during 261 admissions (68%); 44 children received respiratory support (11%) and 21 COVID-19-specific treatments, including antiviral and biologic agents (5%). Being under three months of age (v one year to less than six years: odds ratio [OR], 2.6; 95% confidence interval [CI], 1.7-4.0) and pre-existing medical conditions (OR, 2.5; 95% CI, 1.9-3.2) were the major predictors of hospital admission. Two children died, including one without a known pre-existing medical condition.During 2020 and 2021, most SARS-CoV-2-positive children and adolescents who presented to participating hospitals could be managed as outpatients. Outcomes were generally good, including for those admitted to hospital.16 - Publication
Journal Article Sepsis associated acute kidney injury is common among Aboriginal and Torres Strait Islanders with septic shock and has poor outcomes: A nested cohort study.(2024-10-08) ;Donaldson, L H ;Hammond, N E ;Smyth, K L; ;Taylor, Sean ;Bompoint, S ;Coombes, J ;Bennett-Brook, K ;Bellomo, R ;Myburgh, JVenkatesh, BExploration of the incidence and outcomes of Acute Kidney Injury (AKI) broadly, and sepsis associated AKI specifically, in Aboriginal and Torres Strait Islander (First Nations) people has been limited. We compared a nested cohort of First Nations people drawn from a multinational randomised controlled trial of hydrocortisone in septic shock, to a cohort matched for age, sex and severity of illness. Acute Kidney Injury was defined using the Kidney Disease Improving Global Outcomes (KDIGO) criteria, as well as incident use of kidney replacement therapy (KRT). Major Adverse Kidney Events (MAKE) were described as the composite of death, new dialysis requirement or persisting kidney dysfunction at hospital discharge. A cohort of 57 Aboriginal and/or Torres Strait Islander patients with septic shock was identified. 91.2% (52) of the First Nations cohort met KDIGO criteria for Stage 1 AKI or greater and 63% (36) met Stage 3 criteria. 59.6% (34) of the First Nations required dialysis as compared to 45.6% (26) in the matched cohort. 60.7% (34) of First Nations participants met criteria for MAKE at hospital discharge. The proportions requiring dialysis at 6, 12 and 24 months were 8.3%, 9.1% and 6.9% respectively. The incidences of AKI and MAKE reported in this First Nations cohort are substantially higher than in previously published cohorts of patients with sepsis, even those that use sensitive definitions of AKI. Measures to promote better management of infectious diseases in First Nations communities are required.4 - Publication
Journal Article A Randomised Controlled Trial Comparing Intratympanic Gentamicin with Methylprednisolone in Meniere's Disease with Good Hearing.(2024-10-01) ;Alex, Anu ;Mammen, Manju Deena ;Lepcha, Anjali ;Reka, K ;Augustine, Ann MaryPhilip, AjayA randomized prospective parallel group trial was done to compare the efficacy of intratympanic low dose gentamicin with methylprednisolone in treating intractable unilateral Meniere's disease with serviceable hearing.Randomised prospective parallel group trial.Tertiary care centre in South India.Forty patients with unilateral Meniere's disease and serviceable hearing with vertigo following 6 months of conservative therapy were enrolled between November 2018 and March 2020. Twenty patients were administered with one dose of intratympanic Gentamicin (40 mg/ml) and the other half were given intratympanic Methylprednisolone (40 mg/ml, 4 injections given on alternate days). Pure tone audiogram, speech discrimination score, number of vertigo episodes, dizziness handicap inventory, tinnitus handicap inventory and functional scores were compared before treatment, 3 months later and up to 24 months. There was no significant difference between the two treatments with regard to short term as well as long term DHI scores, THI scores, Functional level score and average pure tone audiogram of patients. In patients with unilateral Meniere's disease who have good hearing, one dose of Gentamicin had equivalent effect to that of four doses of Methylprednisolone in vertigo and tinnitus control, hearing preservation and quality of life. - Publication
Journal Article Review article: A primer for clinical researchers in the emergency department: Part XIII. Strategies to engage staff and enhance participant recruitment in emergency department research.(2024-09-26) ;O'Brien, Sharon ;Wilson, Catherine; ;Nieva, Gaby ;Rao, Medhawani PHaskell, LibbyConducting research in ED is important and necessary to improve emergency care. Effective recruitment is an essential ingredient for the success of a research project and must be carefully monitored. Research coordinators are focused on optimising recruitment to research studies while also ensuring that the needs of participants and their families are met, and the research is acceptable to ED staff. In this paper, a group of experienced research coordinators from Australia and New Zealand have shared their strategies to engage staff and enhance recruitment of participants in emergency research. Although this paper is from a paediatric research network, the findings are applicable for EDs in general, both in Australasia and elsewhere.3